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Old 11-15-2012, 09:51 PM   #1
upendra_35
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Location: USA

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Default USEARCH chimera removal memory error

Hi

I was trying to detect chimera removal command from USEARCH program and i have encountered memory related error. Does anybody have an idea of what it is.......and how to fix it?

usearch6.0.307_i86linux32 -uchime_ref transcripts.fa -db ref.fa -uchimeout results.uchime -strand plus

---Fatal error--- Out of memory, mymalloc(696115460), curr 3.16e+09 bytes

Thanks Upendra
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Old 11-15-2012, 10:10 PM   #2
maasha
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Default

Pay lots of $$$ for the 64 bit version of USEARCH or split the input and reference data sets.
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