SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Which Pipeline is Correct?? lg36 Bioinformatics 5 09-21-2016 02:37 AM
SMRT pipeline wuj Bioinformatics 0 10-29-2010 12:21 PM
Maq v Pipeline vasvale Bioinformatics 1 09-18-2009 09:37 AM
pipeline 1.4 versus 1.3 dvh Illumina/Solexa 7 06-16-2009 08:08 AM

Reply
 
Thread Tools
Old 03-06-2013, 10:32 AM   #1
User001
Junior Member
 
Location: AR

Join Date: Sep 2012
Posts: 6
Default HugeSeq Pipeline

Does anyone have experience using the HugeSeq pipeline (link below)?
http://hugeseq.snyderlab.org/?d1319850

The tools in the pipeline are pretty mainstream (eg BWA, SAMtools, GATK, BreakDancer, Pindel, CNVnator, and BreakSeq), but I haven't found anybody discussing it on the forum. It's nice that somebody integrated these programs as part of a free software package.

Any thoughts on this software?
User001 is offline   Reply With Quote
Reply

Tags
bwa, hugeseq, pipeline, samtools, variant

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:28 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO