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  • CNVnator for Non-human data

    Hello,

    Does anyone have experience with running CNVnator for non-human data?

    I have installed the root package as recommended. However, I keep getting the following error:

    Error in <TPluginManager::FindHandler>: Cannot find plugin handler for TVirtualStreamerInfo! Does $ROOTSYS/etc/plugins/TVirtualStreamerInfo exist?

    *** Break *** segmentation violation
    Error in <TUnixSystem::StackTrace> script /etc/root/gdb-backtrace.sh is missing

    Also, my alignment data came from BLAT of Sanger reads against a reference assembly. The psl output from the BLAT alignments were converted into SAM and subsequently into BAM. Will a non-NGs route pose issues for the tool?

    Thanks,
    BW

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