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  • How to create a GRangesList object for genome not from UCSC?

    Hi,

    I just downloaded a virus genome and the annotation file from NCBI, but not UCSC. How to create a GRangesList object with the virus genome sequence and annotation file that are not from UCSC?

    Thanks,

    Dicty

  • #2
    If you are able to get the gene starts, stops, chromosome, etc into vectors this gist might be helpful:

    GitHub Gist: instantly share code, notes, and snippets.

    Comment


    • #3
      Thanks a lot.

      Actually I'd like to make a TranscriptDb object, but not sure how to do it.

      Comment

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