Hi,
i'm trying to run trimmomatic in pair-ended mode on my two fastq file, but it doesn't work without any error message. Here is what i'm running
When I do that it just said :
I tried to change different things, but nothing seems to work. I tried the "classpath" method which does the exact same thing.
Hope you can help ! thanks
Romain
i'm trying to run trimmomatic in pair-ended mode on my two fastq file, but it doesn't work without any error message. Here is what i'm running
Code:
java -jar trimmomatic-0.32.jar PE -phred33 input1.fast input2.fast pair1.fastq unpair1.fastq pair2.fastq unpaire2.fastq
Code:
Usage: PE [-threads <threads>] [-phred33|-phred64] [-trimlog <trimLogFile>] [-basein <inputBase> | <inputFile1> <inputFile2>] [-baseout <outputBase> | <outputFile1P> <outputFile1U> <outputFile2P> <outputFile2U>] <trimmer1>... or: SE [-threads <threads>] [-phred33|-phred64] [-trimlog <trimLogFile>] <inputFile> <outputFile> <trimmer1>...
Hope you can help ! thanks
Romain
Comment