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Old 11-17-2019, 12:15 PM   #1
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Location: wilmington

Join Date: Nov 2019
Posts: 1
Default MG-RAST help needed

I'm trying to take COG hits from MG-RAST and put them into microbiome analyst. I have an abundance table and a metadata table, in .txt's, all set up. The issue is that microbiomeanalyst isn't taking it. An error message pops up informing me that I have six samples and 3001 values...and only that. I'm not sure if there's a problem with the way my metadata or abundance table is set up, I'm not sure if the issue is that the TSV's that i converted to .txt's from MG-RAST are displaying enzyme names instead of the COG code
Abundance table format:
#NAME Sample1 Sample2 Sample3 etc
C-Carbo... 7 56 75
Metadata format:
#NAME Type
Sample1 G. species 1
Sample2 G. species 1
Sample3 G. species 1
Sample4 G. species 2
Pacificrim1 is offline   Reply With Quote

mg-rast, microbiomeanalyst, please help

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