DeSeq PlotPCA

AniS · 06-24-2013, 11:26 AM

Hi Fellow DeSeq users,

I have used DeSeq for a few of my expression analyses and was trying to plot a PCA graph (for sample clustering) with the same.

Here is the command i used:

print(plotPCA(vsdFull))

I am getting the following error:

Please give the x-coordinate for a legend.plotPCA
Please give the y-coordinate for a legend.

Has anyone seen this before? Please let me know as I am not that proficient with the package yet and would appreciate any input from you.

Thanks in advance
AniS

dan · 09-01-2013, 12:42 PM

Hi AniS, I suspect you've posted in the wrong forum, but... You could try asking your question in an email to the contact address for DESeq listed here:
http://seqanswers.com/wiki/DESeq

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06-24-2013, 11:26 AM	#1
AniS Junior Member Location: NM Join Date: Jun 2013 Posts: 1	DeSeq PlotPCA Hi Fellow DeSeq users, I have used DeSeq for a few of my expression analyses and was trying to plot a PCA graph (for sample clustering) with the same. Here is the command i used: print(plotPCA(vsdFull)) I am getting the following error: Please give the x-coordinate for a legend.plotPCA Please give the y-coordinate for a legend. Has anyone seen this before? Please let me know as I am not that proficient with the package yet and would appreciate any input from you. Thanks in advance AniS

09-01-2013, 12:42 PM	#2
dan wiki wiki Location: Cambridge, England Join Date: Jul 2008 Posts: 266	Hi AniS, I suspect you've posted in the wrong forum, but... You could try asking your question in an email to the contact address for DESeq listed here: http://seqanswers.com/wiki/DESeq __________________ Homepage: Dan Bolser MetaBase the database of biological databases.