Hi All
I have two group of animals. cow and sheep
GroupA: cow1 cow2 cow3
GroupB: sheep1 sheep2 sheep3
All of them have finished the Tophat mapping.
Could I do the DE comparison between two groups?
(1) So far, I don't think Cuffdiff could do this, am I right?
(2) For edgeR/DESeq2,could I firstly get the counts and then uniform the Ensembl ID between cow and sheep (transfer them from cow to sheep or vice versa) , and then do edgeR/DESeq2. Is this OK?
I have two group of animals. cow and sheep
GroupA: cow1 cow2 cow3
GroupB: sheep1 sheep2 sheep3
All of them have finished the Tophat mapping.
Could I do the DE comparison between two groups?
(1) So far, I don't think Cuffdiff could do this, am I right?
(2) For edgeR/DESeq2,could I firstly get the counts and then uniform the Ensembl ID between cow and sheep (transfer them from cow to sheep or vice versa) , and then do edgeR/DESeq2. Is this OK?
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