There aren't a whole lot of NextSeq 500s in the wild yet, but for those lucky among you who have one, are expecting one, or hoping to run your libraries on one soon, please be aware that dual indices are not supported as of this writing. So pick your TruSeq/Nextera index combinations with care.
To quote Illumina over the phone: "we're working on it".
To quote Illumina over the phone: "we're working on it".
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