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Old 09-08-2017, 08:47 PM   #1
chayan
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Location: INDIA

Join Date: Nov 2012
Posts: 46
Default Uniprot IDs for a whole genome

Hallo,

I have extracted a population bin from a metagenome. I have also uploaded the same to the genebank. But according to their rule NCBI won't include it in the refseq as it has came from a metagenome.Now for some downstream analysis I need the uniprot ids of the metagenomic bin. Can any one suggest how to obtain uniprot ids? Is it possible to manually assign the uniprot ids for the protein fasta? I guess from genebank uniprot ids wont b available.

Any help will be much appreciated

Thanks n regards
Chayan
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bioinformatics analysis, gene annotation, metagenomic assembly, ncbi, uniprot

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