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Old 10-08-2013, 11:09 AM   #1
AD13
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Location: New Orleans, LA

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Default Annovar -filtering

Hi All,

I want to use ANNOVAR to run variant reduction, in order to filter out previously identified SNP's in databases such as 1000G, dbSNP, esp6500.
However I am not really sure of commands to use.

Also, is there somewhere I can go and read to figure out what other filters to use?

Could someone please help me out?
Thank-you!
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Old 10-09-2013, 03:32 AM   #2
sdvie
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Here is a description.
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Old 10-09-2013, 08:47 AM   #3
AD13
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Default

Hi,
Thank-you for the reply. I looked at the link, that kind of gives an idea of how to pick those SNP's that have been identified already.
I am looking to do just the opposite.
Could you point me in the right direction...
Thank-you!
Amrita
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