Dear chip-seq experts ,
My boss would like to have fancy chip-seq profiles (reads arounds TSS) for ... yesterday!
I am quite new to the chip-seq world and I was already very happy to have extracted peaks from his data.
Would you know a tool that allows an easy peak visualization starting from the bowtie alignement files? I read that seqminer was able to perform this kind of task but was unable to use it.
After having loaded my bowtie file, I get an error : "you haven't chosen a peak reference" and I am quite lost!
I don't absolutely want to use seqminer and I'm not reluctant to use R or another tool that could be more appropriate.
So, if you get an idea, please, give me a hint. To my opinion, it should not be that difficult, isn't it?
Thank you all for your help,
Sylvain
My boss would like to have fancy chip-seq profiles (reads arounds TSS) for ... yesterday!
I am quite new to the chip-seq world and I was already very happy to have extracted peaks from his data.
Would you know a tool that allows an easy peak visualization starting from the bowtie alignement files? I read that seqminer was able to perform this kind of task but was unable to use it.
After having loaded my bowtie file, I get an error : "you haven't chosen a peak reference" and I am quite lost!
I don't absolutely want to use seqminer and I'm not reluctant to use R or another tool that could be more appropriate.
So, if you get an idea, please, give me a hint. To my opinion, it should not be that difficult, isn't it?
Thank you all for your help,
Sylvain
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