Hi, All,
We recently sequenced a genome around 800M using ILMN GAII and the coverage reached almost 100x. We used SOAP for de novo assembly and the statistics are as blow:
N50 contig:150 bp;
Max contig: ~3K
median contig: 130 bp
Is this assembly a good one with nearly 100x? Could it be further improved?
Thanks a million!
CC
We recently sequenced a genome around 800M using ILMN GAII and the coverage reached almost 100x. We used SOAP for de novo assembly and the statistics are as blow:
N50 contig:150 bp;
Max contig: ~3K
median contig: 130 bp
Is this assembly a good one with nearly 100x? Could it be further improved?
Thanks a million!
CC
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