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  • what does pooled sequensing mean?

    what does pooled sequensing mean? who can tell me? thanks very much!!

  • #2
    Pooled sequencing is a method to find variations that are typical of a population. You mix equimolar concentration of DNA samples from individuals of a population and without any barcoding you sequence it.

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    • #3
      thanks for your answer! can you give me a detailed description of the pooled sequensing?

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      • #4
        Originally posted by bewlib View Post
        thanks for your answer! can you give me a detailed description of the pooled sequensing?
        It's as TiborNagy said. When you are sequencing, instead of separating different samples in a lane by barcoding you just put them in in the same concentrations so as to get a list of differences seen within the pool of samples obtained from the same population. When you are doing the downstream analysis of the data, you do not know which mutation/polymorphism came from which sample but you know that it exists in the population and given enough samples you can predict the frequency of it.

        hope that helps!

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        • #5
          You can read more about this technique in:
          Manual: http://code.google.com/p/popoolation2/wiki/Manual Test data and tutorial: http://code.google.com/p/popoolation2/wiki/Tutorial Validation: http://code.google.com/p/popoolation2/wiki/Validation.

          and here:
          Transposable elements (TEs) are mobile genetic elements that parasitize genomes by semi-autonomously increasing their own copy number within the host genome. While TEs are important for genome evolution, appropriate methods for performing unbiased genome-wide surveys of TE variation in natural popul …

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