MG-RAST help needed

Pacificrim1 · 11-17-2019, 01:15 PM

I'm trying to take COG hits from MG-RAST and put them into microbiome analyst. I have an abundance table and a metadata table, in .txt's, all set up. The issue is that microbiomeanalyst isn't taking it. An error message pops up informing me that I have six samples and 3001 values...and only that. I'm not sure if there's a problem with the way my metadata or abundance table is set up, I'm not sure if the issue is that the TSV's that i converted to .txt's from MG-RAST are displaying enzyme names instead of the COG code
Abundance table format:
#NAME Sample1 Sample2 Sample3 etc
C-Carbo... 7 56 75
Metadata format:
#NAME Type
Sample1 G. species 1
Sample2 G. species 1
Sample3 G. species 1
Sample4 G. species 2
etc

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11-17-2019, 01:15 PM	#1
Pacificrim1 Junior Member Location: wilmington Join Date: Nov 2019 Posts: 1	MG-RAST help needed I'm trying to take COG hits from MG-RAST and put them into microbiome analyst. I have an abundance table and a metadata table, in .txt's, all set up. The issue is that microbiomeanalyst isn't taking it. An error message pops up informing me that I have six samples and 3001 values...and only that. I'm not sure if there's a problem with the way my metadata or abundance table is set up, I'm not sure if the issue is that the TSV's that i converted to .txt's from MG-RAST are displaying enzyme names instead of the COG code Abundance table format: #NAME Sample1 Sample2 Sample3 etc C-Carbo... 7 56 75 Metadata format: #NAME Type Sample1 G. species 1 Sample2 G. species 1 Sample3 G. species 1 Sample4 G. species 2 etc