has anyone in this forum used velvet for short read assembly?
if so would you know if velvet takes into account the base quality during the assembly process and how i may view the assembled sequences to check of base-level coverage, visually identify snps etc.?
tia,
anjan
if so would you know if velvet takes into account the base quality during the assembly process and how i may view the assembled sequences to check of base-level coverage, visually identify snps etc.?
tia,
anjan