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Old 10-20-2011, 08:35 AM   #1
asurain
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Location: Japan

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Unhappy rRNA database of Chicken

Hi all!!
I'm looking for a rRNA database of Chicken to check how much of RNAseq data I've obtained contains ribosomal RNAs.

However, I found no comprehensive database for chicken rRNA sequences.
Do you have any recommendations (Database or the way you identify rRNA sequences)? Thanks!
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Old 10-27-2011, 09:34 AM   #2
Emilie
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Hi asurain,

Did you look at this ?:
ftp://ftp.ensembl.org/pub/release-64..._gallus/ncrna/
It contains the fasta sequences for all the ncRNA, but you can filter for "ncrna:rRNA" to select the rRNA sequences only.

Emilie
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Old 10-27-2011, 05:45 PM   #3
asurain
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Hi Emilie, thank you for your reply!
Yes, I've tried that before. Well, the length does not seem to
be long enough, but is this the largest dataset for chicken rRNA sequences?
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