I see that mateTransformGraph has a -scaffold option:
[-scaffold] Use mate-pairs to scaffold disconnected contigs.
Is there a way to obtain fasta sequence of the resulting scaffolds? Or is there documentation to explain how one might parse any of the .graph or .edge or .path files with the goal of constructing a scaffolds fasta file?
Thanks much.
[-scaffold] Use mate-pairs to scaffold disconnected contigs.
Is there a way to obtain fasta sequence of the resulting scaffolds? Or is there documentation to explain how one might parse any of the .graph or .edge or .path files with the goal of constructing a scaffolds fasta file?
Thanks much.
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