Hello,
I am trying to install CASAVA on my Gentoo system and I get the following error.
I am trying to install CASAVA on my Gentoo system and I get the following error.
[ 0%] Built target CASAVA_SAMTOOLS
[ 0%] Building illumina_samtools_extensions
bam_cat.c: In function 'bam_cat':
bam_cat.c:122:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:126:32: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:129:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:142:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
[ 0%] Built target CASAVA_ILMNSAMTOOLS
[ 0%] Unpacking merge.xslt
[ 1%] Built target CASAVA_MERGE_XSLT
[ 1%] Extracting the Chart director library and tools
[ 1%] Built target CASAVA_CHART_DIRECTOR
[ 1%] Extracting the CodeMin headers and examples
[ 2%] Built target CASAVA_CODE_MIN
[ 2%] Built target CASAVA_OPT
[ 12%] Built target casava_blt_util
[ 19%] Built target casava_blt_common
[ 20%] Built target casava_blt
[ 32%] Built target casava_starling
[ 45%] Built target casava_common
[ 46%] Built target casava_io
[ 50%] Built target casava_alignment
[ 51%] Built target casava_basecalling
[ 51%] Built target casava_assembly
[ 58%] Built target casava_variance
[ 58%] Building CXX object c++/lib/applications/CMakeFiles/casava_applications.dir/AlignContig.cpp.o
/home/george/Downloads/CASAVA_v1.8.2/src/c++/lib/applications/AlignContig.cpp: In member function 'int ca::applications::AlignContig::run()':
/home/george/Downloads/CASAVA_v1.8.2/src/c++/lib/applications/AlignContig.cpp:569:87: error: conversion from 'boost::filesystem3:ath' to non-scalar type 'std::string {aka std::basic_string<char>}' requested
make[2]: *** [c++/lib/applications/CMakeFiles/casava_applications.dir/AlignContig.cpp.o] Error 1
make[1]: *** [c++/lib/applications/CMakeFiles/casava_applications.dir/all] Error 2
make: *** [all] Error 2
[ 0%] Building illumina_samtools_extensions
bam_cat.c: In function 'bam_cat':
bam_cat.c:122:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:126:32: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:129:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
bam_cat.c:142:23: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result]
[ 0%] Built target CASAVA_ILMNSAMTOOLS
[ 0%] Unpacking merge.xslt
[ 1%] Built target CASAVA_MERGE_XSLT
[ 1%] Extracting the Chart director library and tools
[ 1%] Built target CASAVA_CHART_DIRECTOR
[ 1%] Extracting the CodeMin headers and examples
[ 2%] Built target CASAVA_CODE_MIN
[ 2%] Built target CASAVA_OPT
[ 12%] Built target casava_blt_util
[ 19%] Built target casava_blt_common
[ 20%] Built target casava_blt
[ 32%] Built target casava_starling
[ 45%] Built target casava_common
[ 46%] Built target casava_io
[ 50%] Built target casava_alignment
[ 51%] Built target casava_basecalling
[ 51%] Built target casava_assembly
[ 58%] Built target casava_variance
[ 58%] Building CXX object c++/lib/applications/CMakeFiles/casava_applications.dir/AlignContig.cpp.o
/home/george/Downloads/CASAVA_v1.8.2/src/c++/lib/applications/AlignContig.cpp: In member function 'int ca::applications::AlignContig::run()':
/home/george/Downloads/CASAVA_v1.8.2/src/c++/lib/applications/AlignContig.cpp:569:87: error: conversion from 'boost::filesystem3:ath' to non-scalar type 'std::string {aka std::basic_string<char>}' requested
make[2]: *** [c++/lib/applications/CMakeFiles/casava_applications.dir/AlignContig.cpp.o] Error 1
make[1]: *** [c++/lib/applications/CMakeFiles/casava_applications.dir/all] Error 2
make: *** [all] Error 2
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