Hi all,
I have a (probably) very naive question ..
We are running a few machines here as a core facility (Hiseq2000, GAIIx, 454tit,SOLiD) ... there are a couple of users interested in the capabilities of GALAXY, so I am thinking about a local install of the whole package.
My concern is the data amount. E.g. one Hiseq2000 lane with a PE whole exome lib is roughly 2x20G (unzipped) fastq. I can definitively reduce the amount by zipping the datasets. But this is still a huge amount of data to be uploaded via Browser ...
How is this working in practice if you have more than one lane?
How are the jobs scheduled?
I probably need to read more en detail before starting to set up my own installation ...
thanks for any comment ..
cheers,
Sven
I have a (probably) very naive question ..
We are running a few machines here as a core facility (Hiseq2000, GAIIx, 454tit,SOLiD) ... there are a couple of users interested in the capabilities of GALAXY, so I am thinking about a local install of the whole package.
My concern is the data amount. E.g. one Hiseq2000 lane with a PE whole exome lib is roughly 2x20G (unzipped) fastq. I can definitively reduce the amount by zipping the datasets. But this is still a huge amount of data to be uploaded via Browser ...
How is this working in practice if you have more than one lane?
How are the jobs scheduled?
I probably need to read more en detail before starting to set up my own installation ...
thanks for any comment ..
cheers,
Sven
Comment