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Old 06-19-2013, 08:31 PM   #1
Jane Lee
Junior Member
 
Location: China

Join Date: Feb 2013
Posts: 6
Default contig mapping reference blat psl result handle

I mapped my resequencing contigs to the reference which is the same species with blat to locate these contigs, than I want to join the ordered contigs into big ones according to their position on the reference to run gene prediction, do anyone have the experience to do this and a tested script can finish this? And I found that two different contigs overlap on the same tens of basepairs on the reference, is this normal?

Thank you in advance!

Best wishes!
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