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Old 06-19-2013, 08:31 PM   #1
Jane Lee
Junior Member
Location: China

Join Date: Feb 2013
Posts: 6
Default contig mapping reference blat psl result handle

I mapped my resequencing contigs to the reference which is the same species with blat to locate these contigs, than I want to join the ordered contigs into big ones according to their position on the reference to run gene prediction, do anyone have the experience to do this and a tested script can finish this? And I found that two different contigs overlap on the same tens of basepairs on the reference, is this normal?

Thank you in advance!

Best wishes!
Jane Lee is offline   Reply With Quote

blat, contig, mapping, psl, script

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