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Old 01-07-2010, 02:39 PM   #1
pcg
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Location: USA

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Default Velvet Assemby Reference

Hi All,

Can velvet align to a reference genome and if so how? Also do people have any thoughts on a good hash length. I am trying to align a transcriptome to a reference genome. I have 20M 35bp reads from Solexa.

Thanks,

Paul
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Old 01-14-2010, 06:37 AM   #2
Melissa
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Velvet is an assembler not aligner. Look at alignment tools at http://seqanswers.com/forums/showthread.php?t=43 under "Align/Assemble to a reference".
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