Hi all, I'm having a problem which is more linux related than biology related. I'm running the BRAKER1 pipeline (which involves Augustus and Gene-mark ET) for a gene prediction, and I'm getting back a weird error which I wasn't able to solve using StackOverflow or other troubleshooting websites.
This is the STDERR:
Inappropriate ioctl for device is something I never had the pleasure to solve. Can anybody help me?
Thank you very much,
Matteo
This is the STDERR:
Code:
NEXT STEP: check files and settings NEXT STEP: check options ... options check complete. NEXT STEP: check fasta headers fasta headers check complete. NEXT STEP: create SAM header file [...]. SAM file [...] complete. NEXT STEP: check BAM headers headers check for BAM file [...] complete. NEXT STEP: make hints from BAM file [...] failed to execute: Inappropriate ioctl for device
Thank you very much,
Matteo
Comment