Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Celera Assembler Installation Failure

    Hello,
    I'm just trying to test runCA, but it appears that the program can't find gatekeeper in its bin (though I've checked and it's there). Has anyone run into this problem before/have ideas what might be going on? I'm just an undergraduate/I don't have much experience with genome assembly so any advice/insight would be much appreciated! Error message is below. Thanks in advance.


    runCA failed.

    ----------------------------------------
    Stack trace:

    at /usr/bin/runCA line 1501
    main::caFailure('can\'t find \'gatekeeper\' program in /Linux-amd64/bin. Poss...', undef) called at /usr/bin/runCA line 1049
    main::setParameters() called at /usr/bin/runCA line 6282

    ----------------------------------------
    Failure message:

    can't find 'gatekeeper' program in /Linux-amd64/bin. Possibly incomplete installation

  • #2
    You may want to change into the bin directory, or try adding the directory to your path

    export PATH=/home/yourdirectory/wgs-8.1/Linux-amd64/bin:$PATH

    You can also add this to your .bashrc file

    Comment


    • #3
      Thank you, that worked!

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 11:49 AM
      0 responses
      12 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 08:47 AM
      0 responses
      16 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      61 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      60 views
      0 likes
      Last Post seqadmin  
      Working...
      X