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Old 06-07-2011, 10:34 AM   #1
BertieWooster
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Location: Sydney, Australia

Join Date: Jul 2009
Posts: 14
Question CNVnator for Non-human data

Hello,

Does anyone have experience with running CNVnator for non-human data?

I have installed the root package as recommended. However, I keep getting the following error:

Error in <TPluginManager::FindHandler>: Cannot find plugin handler for TVirtualStreamerInfo! Does $ROOTSYS/etc/plugins/TVirtualStreamerInfo exist?

*** Break *** segmentation violation
Error in <TUnixSystem::StackTrace> script /etc/root/gdb-backtrace.sh is missing

Also, my alignment data came from BLAT of Sanger reads against a reference assembly. The psl output from the BLAT alignments were converted into SAM and subsequently into BAM. Will a non-NGs route pose issues for the tool?

Thanks,
BW
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