Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Metavelvet not producing "meta-velvetg.contigs.fa"

    Hi everyone

    I'm having problems running Metavelvet on my Ubuntu 14/Biolinux 8 (64GB RAM)

    I follow the tutorial step by step from http://metavelvet.dna.bio.keio.ac.jp/MV.html#install using the sample data they provide.

    Velveth and velvetg work fine and I obtain the Graph2 file used in metavelvet. However, after running metavelvet (without apparent error) I do not get the "meta-velvetg.contigs.fa" I do get the "meta-velvetg.split-stats.txt" and "meta-velvetg.Graph2-stats.txt"

    I've seen this other post https://www.biostars.org/p/109931/#253633 where they say that it might have to do with the compiler gcc version. I currently have gcc 4.9 but apparently metavelvet can only run with gcc 4.6 or lower. I tried downgrading to gcc 4.6 but for what I have read it is not that easy nor advisable to downgrade gcc.

    Any ideas how can I solve this problem? Is there a way to specifically install metavelvet using the gcc 4.6?

    Thanks!

Latest Articles

Collapse

  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM
  • seqadmin
    The Impact of AI in Genomic Medicine
    by seqadmin



    Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
    02-26-2024, 02:07 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 03-14-2024, 06:13 AM
0 responses
34 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-08-2024, 08:03 AM
0 responses
72 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-07-2024, 08:13 AM
0 responses
81 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-06-2024, 09:51 AM
0 responses
68 views
0 likes
Last Post seqadmin  
Working...
X