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Old 06-23-2011, 07:58 AM   #1
seq_newbie
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Location: Ireland

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Default How to convert BED format to SAM/BAM?

Hi,

I require a junctions file in SAM format and I have it in BED format. I was wondering is there a tool to convert BED to SAM or BED to BAM? (and I can then use samtools to complete the conversion from BAM to SAM).

Regards,

K.
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Old 06-23-2011, 08:11 AM   #2
poisson200
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You can try installing BEDTools and using bedToBam
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