Hello,
I am wondering if tools for automatic analyses of snps and indels detection have been developped.
Let me explain my problem: I have the results of a DNA-seq experiment. I have a list of SNPs and indels.
For each mis/non sens (stop codon, synonymous mutation...), I would like to know the complete name of the gene, its functions and if the mutation takes place in a "preserved domain" in order to study the consequences of this mutation.
Now, I have to look "by hand" through different websites to find this information (pubmed...). This approach is possible with a small number of such genes. Since I will got an important number of genes to analyze, I would like to find an automatic way for getting these information.
Has anyone heard about such a tool ? Otherwise, I will try to code something with R, but if it already exists, I will same time !
Thanks,
Jane
I am wondering if tools for automatic analyses of snps and indels detection have been developped.
Let me explain my problem: I have the results of a DNA-seq experiment. I have a list of SNPs and indels.
For each mis/non sens (stop codon, synonymous mutation...), I would like to know the complete name of the gene, its functions and if the mutation takes place in a "preserved domain" in order to study the consequences of this mutation.
Now, I have to look "by hand" through different websites to find this information (pubmed...). This approach is possible with a small number of such genes. Since I will got an important number of genes to analyze, I would like to find an automatic way for getting these information.
Has anyone heard about such a tool ? Otherwise, I will try to code something with R, but if it already exists, I will same time !
Thanks,
Jane
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