Hello, I am a newbie and I have a question,
Is it possible to get alignment statistics from sam output of bwa algorithm? And also, what happens to unaligned reads? Are there also present in the generated sam file? I have several 0's in the FLAG field in the sam output, is it an unmapped read?
Well, it seems like I have more than one question
Is it possible to get alignment statistics from sam output of bwa algorithm? And also, what happens to unaligned reads? Are there also present in the generated sam file? I have several 0's in the FLAG field in the sam output, is it an unmapped read?
Well, it seems like I have more than one question
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