SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
decode protein-lncRNA, protein-ncRNA, protein-mRNA interactions from CLIP-Seq data yjhua2110 RNA Sequencing 9 06-04-2015 12:12 AM
Protein coding sequence in Transcriptomic data aloliveira Bioinformatics 0 05-07-2014 04:22 AM
issues in running prof protein prediction tool bio_informatics Bioinformatics 0 01-08-2014 09:07 PM

Reply
 
Thread Tools
Old 08-02-2017, 04:55 AM   #1
duncanwells123
Junior Member
 
Location: Belfast

Join Date: Aug 2017
Posts: 1
Default Protein prediction from transcriptomic data

I have a fasta file containing transcripts obtained from rna-seq data. How do I get these sequences into their protein equivalents? I know expasy translate can be used for individual transcripts, but how is it done en masse?
duncanwells123 is offline   Reply With Quote
Old 08-04-2017, 04:07 AM   #2
colindaven
Senior Member
 
Location: Germany

Join Date: Oct 2008
Posts: 391
Default

Transdecoder ?

http://transdecoder.github.io/
colindaven is offline   Reply With Quote
Reply

Tags
proteomics, rna-seq, transcriptomics, translation

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:05 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO