Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Samtools mac install problems

    Hello - relative bioinformatics newbie here, so apologies in advance if these are stupid questions!

    I'm trying to install Samtools (tried both 1.4.1 and 1.5) on Mac OS X 10.11.6.

    I seem to get through the install process (using ./configure, make and make install without any error messages, but it seems to me that the resulting Samtools folder only contains a limited selection of the executables that should be available:

    ace2sam* export2sam.pl* maq2sam-short* novo2sam.pl* sam2vcf.pl* seq_cache_populate.pl* wgsim*
    blast2sam.pl* interpolate_sam.pl* md5fa* plot-bamstats* samtools* soap2sam.pl* wgsim_eval.pl*
    bowtie2sam.pl* maq2sam-long* md5sum-lite* psl2sam.pl* samtools.pl* varfilter.py* zoom2sam.pl*

    For example, faidx is not there. Am I missing something here - is there another folder with the rest of the executables?

    Thanks in advance!

  • #2
    I answered your identical question on Biostars: https://www.biostars.org/p/258576/ already.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Recent Advances in Sequencing Analysis Tools
      by seqadmin


      The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
      Today, 07:48 AM
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Today, 07:17 AM
    0 responses
    8 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-02-2024, 08:06 AM
    0 responses
    19 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-30-2024, 12:17 PM
    0 responses
    20 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-29-2024, 10:49 AM
    0 responses
    28 views
    0 likes
    Last Post seqadmin  
    Working...
    X