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Old 11-20-2018, 02:54 AM   #1
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Location: Bologna

Join Date: Nov 2018
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Default kmer problems after trimming

Hi guys, I'm having some weird problems in trimming my genome (Hiseq 2000). I tried with trimmomatic using the classic Trueseq and a huge list of adapters taken from BBmap, but I have always the same problem: even if i remove the illumina adapters, I can't remove all the kmers and, above all, after trimming new k-mers come out at the end of the reads . can someone explain this behavior ?
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