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There is also the Entrez Utilities Fetch command, EFetch, which is probably using the same thing once it gets to the NCBI;
Libraries like BioPerl and Biopython have an API to try and make this more friendly.
Also have a look at TogoWS - especially if based in Asia, as their URL API is really simple to use:
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wget 'https://www.ncbi.nlm.nih.gov/search/api/sequence/${accession}/?report=fasta'
works nowadays, e.g.:
wget -O NC_001416.1.fasta 'https://www.ncbi.nlm.nih.gov/search/api/sequence/NC_001416.1/?report=fasta'
downloads the lambda phage: https://www.ncbi.nlm.nih.gov/nuccore/9626243
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by seqadmin
The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.
Avian Conservation
Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...-
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03-08-2024, 10:41 AM -
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by seqadmin
Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...-
Channel: Articles
02-26-2024, 02:07 PM -
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