SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
MaSuRCA error during CA scaffolding step crd1859 Illumina/Solexa 4 02-16-2018 09:21 AM
MaSuRCA [email protected] Introductions 0 04-27-2017 07:43 PM
MaSuRCA error bsp017 Illumina/Solexa 18 05-15-2016 10:23 PM
MaSuRCA-Quorum Camael Bioinformatics 0 03-07-2015 07:27 PM
What reads were assembled by MaSuRCA? seqEQlkw Bioinformatics 0 10-23-2014 06:17 PM

Reply
 
Thread Tools
Old 05-06-2018, 11:16 PM   #1
jeanlain
Junior Member
 
Location: france

Join Date: May 2018
Posts: 1
Default CELERA scaffolding questions (MaSuRCa)

Hello,

I have a few questions about the GGW phase of MaSurCa, which is taking a long time (3 weeks and running on a 550 Mb insect genome).

- Can I remove some genome.cpk files that it keeps generating every two days? I'm running out of disk space.
- I suspect the long run time is due to some insert sizes of certain (very small) Sanger libraries that I'm using, as these appear incorrect. I'd like to remove these libraries and relaunch the CGW phase. Is that possible, or will CA complain that I removed some data that it used for overlapping? I'd rather not redo all the CA steps.

Thanks.

Jean
jeanlain is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:47 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO