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Old 01-12-2016, 01:19 AM   #1
Location: Poland

Join Date: Jun 2013
Posts: 37
Exclamation Mafft mismatch value


I tried to find both in

to find the nucleotide mismatch value that mafft uses but I could not find it,

Any idea what is the value?

knowing that
Scoring matrix for nucleotide alignment. The default scoring matrix is derived from Kimura's two-parameter model. The ratio of transitions to transversions is set at 2 by default. Other parameters can be used, but have not yet been tested.
Medhat is offline   Reply With Quote

aligner, alignment, sequence

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