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Old 01-08-2016, 05:08 AM   #1
peromhc
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Location: Durham, NH

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Default optimizing transcriptome assembly

Hi All,

I wanted to make sure people have seen the new Oyster River Protocol for transcriptome assembly. In brief, itís an evidence based protocol for optimizing assembly providing recommendations from the how many reads to generate, to how to report results, and everything in between. The protocol itself is here, the manuscript here, and the blog post here..

Feel free to use and share with whoever, as you see fit. Iím happy to answer questions either here, or (preferably?), on Gitter https://gitter.im/macmanes-lab/Oyster_River_Protocol.
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Old 01-10-2016, 08:02 AM   #2
colindaven
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Thank you for your efforts, this is very useful! Do you have any plans to distribute this via docker / VM ?
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Old 01-12-2016, 03:49 PM   #3
peromhc
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I had not thought to, but do you think that would be helpful for people?
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rnaseq, transcriptome assembly, trinity

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