SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Converting VCF to PLINK PED format, need help? ketan_bnf Bioinformatics 2 03-21-2017 01:35 AM
Does anybody know how to convert dbsnp to .vcf (variant calling format)? alexbmp Bioinformatics 13 04-05-2015 10:24 PM
Convert CASAVA file to VCF danielsbrewer Bioinformatics 4 03-13-2013 08:19 AM
convert CASAVA variant calls to VCF? krish Bioinformatics 0 12-01-2011 08:44 PM
convert vcf into bed format nans_bn Bioinformatics 0 08-01-2011 11:34 PM

Reply
 
Thread Tools
Old 12-19-2011, 01:39 PM   #1
emilyjia2000
Member
 
Location: usa

Join Date: May 2011
Posts: 59
Default How to convert VCF to PED

Hello,

I tried to use vcftools to convert VCF file to plink PED, VCF file was generated from GATK with 10 samples. vcftools (0.1.7) was chosen to do the conversion.


Thanks for the help.

Last edited by emilyjia2000; 12-26-2011 at 06:44 AM.
emilyjia2000 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:55 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO