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Old 04-12-2013, 04:17 PM   #1
vmrosario
Junior Member
 
Location: Nijmegen, the Netherlands

Join Date: Oct 2012
Posts: 5
Default vcf to ped conversion

I'm trying to convert vcf files to ped files, but I get a weird error.

I execute:
Code:
vcftools --gzvcf chr23.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.EUR.nosingles.vcf.gz --chr X --plink --out chr23
And I get the following error:
Code:
Using zlib version: 1.2.3
Versions of zlib >= 1.2.4 will be *much* faster when reading zipped VCF files.
Reading Index file.
File contains 406938 entries and 379 individuals.
Filtering by chromosome.
terminate called after throwing an instance of 'std::bad_alloc'
  what():  St9bad_alloc
Aborted
Has anyone ever seen this error? How can I convert my file to ped format?
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