Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Alternatives to SequalPrep acockburn Sample Prep / Library Generation 0 11-17-2015 05:56 AM
alternatives to Covaris eab Sample Prep / Library Generation 13 01-27-2014 10:00 AM
Gbrowse Alternatives Amative Bioinformatics 9 02-12-2013 02:14 PM
small RNA Tool for SOLiD reads failed any alternatives? KevinLam Bioinformatics 4 12-27-2010 11:01 AM

Thread Tools
Old 01-11-2016, 12:56 PM   #1
Junior Member
Location: SF

Join Date: Jan 2016
Posts: 1
Default Alternatives to Broad's DAPPLE tool

Hi everyone

I have a set of coding variants, on which I want to run some protein protein interaction tools. I've used a couple of resources so far (String, CPDB), and I really want to use Broad's (online) DAPPLE tool. Unfortunately it's been down for some time now, and I can't get a hold of the tool's developers, nor can I find any sources to download so I can run it locally.

My questions - is there anyone here that has used this tool? Could anyone recommend a similar tool, or does anyone have source I could install/run locally?

For reference I've attached a screenshot of a figure generated by DAPPLE, from Neale et al's 2012 article "Patterns and rates of exonic de novo mutations in autism spectrum disorders".

Thank you!
Attached Images
File Type: png Neale2012_DAPPLE.png (57.7 KB, 4 views)
sic is offline   Reply With Quote

broad institute, interaction, pathway analysis, protein clustering

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:18 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO