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Old 07-21-2017, 03:34 AM   #1
R.66
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Location: Asia

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Default how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analy

hi everyone

i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis by DAVID. how can i do it and how can i rank genes containing most non-synonymous snps.

thanks in advance
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go analysis, non-synonymous, snp, snpeff

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