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Old 06-18-2019, 12:50 AM   #1
lasantos
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Location: Porto Alegre, Brazil

Join Date: Jun 2019
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Default Question: Not-Merged Reads What to do?

Hey guys,
So I'm working with pair-end data and I'm concerning regarding the merged/not-merged reads. I'm currently merging them using PEAR and QIIME 2, but I would not like to discard those not merged reads. Should I treat them as "single-end"-like reads? Or it is best to discard them? I'm worried I'll loose too much information if I simply discard not-merged reads.
Thank you.
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