SEQanswers

Go Back   SEQanswers > General



Similar Threads
Thread Thread Starter Forum Replies Last Post
Determining number of merge-able reads cheezemeister Bioinformatics 1 05-07-2015 11:50 AM
determining number of reads in a contig using clc genomics work bench kaps General 2 04-22-2015 03:01 AM
Determining the number of bases and percent coverage in an aligned sequence kz26 Bioinformatics 0 06-28-2010 09:22 PM

Reply
 
Thread Tools
Old 10-20-2021, 04:12 PM   #1
MosquitoMan
Junior Member
 
Location: Manitoba

Join Date: Oct 2021
Posts: 2
Default Determining number of reads

Hi all,

I am attempting to determine the number of reads associated with each blast hit, and I am wondering if anyone has a resource that could explain how to do this? My goal is to present my data in a way that shows the number of reads from different taxa (e.g., virus families). I know that it might involve mapping back the sequence to my contig (I think?) but usure how I would do this. I am using CLC, and this is from RNA-Seq!
MosquitoMan is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:36 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO