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Old 01-15-2014, 07:02 AM   #1
deep639
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Default Mapping RNA seq reads

Hello, I am new to this forum. I am writing this thread because I wanted to know what would be the best way to go about mapping RNA seq reads that I have to my reference gneome (hg 19 genome). I have 8 fastq files that I need to map. I am new to this mapping and need help.
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Old 01-15-2014, 07:13 AM   #2
GenoMax
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Basic guide: http://en.wikibooks.org/wiki/Next_Ge..._%28NGS%29/RNA

TopHat/Cufflinks: http://www.nature.com/nprot/journal/....2012.016.html

If you are a biologist wanting to learn (enough) UNIX to use some of the programs above then part I of this guide: http://korflab.ucdavis.edu/Unix_and_...rl_v3.1.1.html
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Old 01-15-2014, 07:16 AM   #3
deep639
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Thank you very much.
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