|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| RNAseq: Pipeline to detect allele specific expression | dariober | Bioinformatics | 9 | 07-17-2015 01:46 PM |
| allele-specific expression | baohua100 | Bioinformatics | 0 | 05-11-2011 12:32 AM |
| Test of allele-specific expression by genome and transcritome sequencing | baohua100 | RNA Sequencing | 1 | 05-02-2011 07:00 AM |
| PubMed: Allele-specific expression assays using Solexa. | Newsbot! | Literature Watch | 0 | 09-11-2009 03:01 AM |
| PubMed: Genome-wide allele-specific expression analysis using Massively Parallel Sign | Newsbot! | Literature Watch | 0 | 02-21-2008 03:06 PM |
 |
|
|
Thread Tools |
05-01-2011, 02:02 AM
|
#1 |
|
Senior Member
Location: Canada Join Date: Jun 2008
Posts: 103
|
allele-specific expression by direct genome and transcritpome sequencing
We sequenced the diploid genome of a single individual and their transcritome.
(Poplar) Fisrt, we identiy all the heterozygosity SNPs (genome). If i know it's a heterozygosity SNPs, Should I do a chi square test using the number (65,89,38,28) or do a bionomal test (50,50,38,28) ? an example of heterozygosity SNP (The numbers are counts of the two alleles observed in gDNA or cDNA) gDNA cDNA A 65 38 G 89 28 |
|
|
|
| Thread Tools | |
|
|
