Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
bowtie reference genome index: help required kevlim83 Bioinformatics 11 12-09-2014 07:36 PM
BWA parameters for mRNA-seq aligning against mRNA refseq kwicher SOLiD 1 09-19-2011 04:45 AM
Index between genome and mRNA xinhaiping Genomic Resequencing 0 06-20-2011 10:14 AM
The quality control index or parameter of the whole genome de novo sequencing wave001 Bioinformatics 0 06-25-2010 09:28 AM
Upload genome index to Galaxy for Bowtie alignment? jjw14 Bioinformatics 0 06-08-2010 09:22 AM

Thread Tools
Old 06-20-2011, 10:15 AM   #1
Junior Member
Location: urbana.IL

Join Date: Jun 2011
Posts: 4
Unhappy index between genome and mRNA

Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?
xinhaiping is offline   Reply With Quote

genome, index, mrna, snp

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:03 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO