|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| predicting the function of a variant | kjaja | Bioinformatics | 0 | 01-24-2012 11:26 AM |
| CanFam2 data RNAseq samples and GenomicRanges | biofreak | Bioinformatics | 0 | 08-08-2011 11:35 AM |
| plotSmear() function in edgeR | Martin Umhang | RNA Sequencing | 1 | 01-25-2011 03:01 AM |
| Scripture score function | wuj | Bioinformatics | 1 | 09-09-2010 07:21 AM |
| Function annotation | Guedes | General | 0 | 06-18-2010 02:56 PM |
 |
|
|
Thread Tools |
08-11-2011, 10:02 AM
|
#1 |
|
Member
Location: USA Join Date: Jun 2011
Posts: 44
|
exonsBy function in GenomicRanges package
Hi All,
I am working with canFam2 data. The commands used are: canFamrefGene <- makeTranscriptDbFromBiomart(biomart="ensembl",dataset="cfamiliaris_gene_ensembl") exonRangesList <- exonsBy(canFamrefGene, "gene") the data is not sorted per chromosome in the exonRangesList object. This is later giving me problems with countOverlaps function. Can someone please help. |
|
|
|
| Thread Tools | |
|
|
