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Old 07-18-2012, 11:00 PM   #1
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Location: Melbourne

Join Date: Jul 2012
Posts: 4
Default Drosophila Reference gene annotation when using Cufflinks...


I am very new and very much a beginner when it come to NGS technologies. I have aligned my RNAseq reads to the dm3 genome in galaxy (UCSC dm3 Drosophila annotation). For some reason the gene_ids are all annotated as CUFF.6 or CUFF.1 etc. but I would hope and expect gene-ids to be CG numbers from the annotation...

Would anyone know what I have done wrong?

Thanks in advance for any insight

Last edited by nmfly; 07-19-2012 at 04:34 PM.
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