SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
RepeatModeler chrisbioinfo Bioinformatics 15 06-19-2013 11:11 AM
RepeatModeler runtime sunhh Bioinformatics 0 10-02-2012 11:14 AM
Problem running RepeatModeler (using WUBlast) najoshi Bioinformatics 1 08-19-2011 01:18 PM
Unigenes Families hicham Bioinformatics 0 07-20-2010 03:40 AM
Inbred finnish families from 1600 pettervikman Introductions 1 12-07-2009 07:25 AM

Reply
 
Thread Tools
Old 12-18-2012, 01:01 AM   #1
biocc
Member
 
Location: beijing

Join Date: Jul 2008
Posts: 35
Default 0 families found in RepeatModeler

Hi,
Everyone, I am using RepeatModeler3.3.0 to built a bacteria library. I tested several times with same output. The whole process is ok, and output files included an empty consensi.fa. consensi.fa.classified could not be found. Some information of the log is following:

---------------------------------------------------------------------------------------------------------------------------
100% completed, 0:0:0 (hh:mm:ss) est. time remaining.
Comparison Time: 0:4:25 Elapsed Time, 222 HSPs Collected
- RECON: Running imagespread..
RECON Elapsed: 0:0:0 Elapsed Time
- RECON: Running initial definition of elements ( eledef )..
RECON Elapsed: 0:0:0 Elapsed Time
- RECON: Running re-definition of elements ( eleredef )..
RECON Elapsed: 0:0:0 Elapsed Time
- RECON: Running re-definition of edges ( edgeredef )..
RECON Elapsed: 0:0:0 Elapsed Time
- RECON: Running family definition ( famdef )..
RECON Elapsed: 0:0:0 Elapsed Time
- Obtaining element sequences
Number of families returned by RECON: 57
Processing families with greater than 15 elements
Family Refinement: 0:0:0 Elapsed Time
Round Time: 0:4:31 Elapsed Time

Discovery complete: 0 families found
Program Time: 0:5:41 Elapsed Time
--------------------------------------------------------------------------------------------------------
It seems the none families were found. Could you give me some suggestions? Any help will be appreciated.
biocc is offline   Reply With Quote
Reply

Tags
repeatmodeler

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:57 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO