Hi all,
For any solexa run, we see 60-80% passing filter reads, of which 70-90% map to the reference sequence. There are quite a few reads that map to adaptors and other random sequences.
Does anyone know of a resource to get an average for those passing-filter reads? that map to adapter, etc and are essentially noise and not useful. I remember it being mentioned in some review as well, but cannot recollect
thanks..
For any solexa run, we see 60-80% passing filter reads, of which 70-90% map to the reference sequence. There are quite a few reads that map to adaptors and other random sequences.
Does anyone know of a resource to get an average for those passing-filter reads? that map to adapter, etc and are essentially noise and not useful. I remember it being mentioned in some review as well, but cannot recollect
thanks..
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