Orthomcl problems

jflowers002 · 08-21-2013, 02:54 PM

I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

I am not sure what to do.

Thanks!

GenoMax · 08-21-2013, 04:08 PM

Did you follow the directions in the user guide to install/configure program/database etc?

The error above seems to indicate that you either did not create that table or called it something else.

jflowers002 · 08-26-2013, 07:14 AM

Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

Thanks again!

impessa · 07-22-2014, 07:54 AM

Hi
Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

Thanks !!

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08-21-2013, 02:54 PM	#1
jflowers002 Junior Member Location: Seattle Join Date: Jan 2013 Posts: 6	Orthomcl problems I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error: DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist. I am not sure what to do. Thanks!

08-26-2013, 07:14 AM	#3
jflowers002 Junior Member Location: Seattle Join Date: Jan 2013 Posts: 6	Solved Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation. Thanks again!

08-21-2013, 04:08 PM	#2
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 7,080	Did you follow the directions in the user guide to install/configure program/database etc? The error above seems to indicate that you either did not create that table or called it something else.

07-22-2014, 07:54 AM	#4
impessa Junior Member Location: Medellín (Col) Join Date: Jul 2014 Posts: 1	Hi Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ? Thanks !!